I have a similar question, but I am more interested in if anyone has seen a change in MPG after an EGR delete.
To answer your question, I am currently running with a blocked off EGR, due to an issue with tube alignment on a new set of headers. After a week, the ECU is not throwing any codes. However, I don't know if it is a good idea to remove the EGR valve in addition to the tube. My ECU was throwing a P0400 code until I discovered a disconnected vacuum line. Not sure how sensitive those sensors are, and you would have to be blocking off vacuum lines.
To answer your question, I am currently running with a blocked off EGR, due to an issue with tube alignment on a new set of headers. After a week, the ECU is not throwing any codes. However, I don't know if it is a good idea to remove the EGR valve in addition to the tube. My ECU was throwing a P0400 code until I discovered a disconnected vacuum line. Not sure how sensitive those sensors are, and you would have to be blocking off vacuum lines.